INSPIIRED: A Pipeline for Quantitative Analysis of Sites of New DNA Integration in Cellular Genomes: Molecular Therapy - Methods & Clinical Development
Precise genomic mapping of 5-hydroxymethylcytosine via covalent tether-directed sequencing | PLOS Biology
Schematic representation of integration site sequencing. Sonication... | Download Scientific Diagram
End-seq – map both 5' and 3' transcript ends genome-wide at single nucleotide resolution in 3 days | RNA-Seq Blog
CITE-Seq - Wikipedia
Mapping the genomic landscape of CRISPR–Cas9 cleavage | Nature Methods
CITE-seq | A collection of resources for performing CITE-seq
Long-read sequencing for identification of insertion sites in large transposon mutant libraries | Scientific Reports
Mapping of transposon directed insertion site sequences to repeated... | Download Scientific Diagram
Comparison of restriction-site associated DNA sequencing methods | Download Scientific Diagram
Mapping the genomic landscape of CRISPR–Cas9 cleavage | Nature Methods
Frontiers | An Improved Sequencing-Based Bioinformatics Pipeline to Track the Distribution and Clonal Architecture of Proviral Integration Sites
Mapping of Transcription Start Sites – TSS - France Génomique
Frontiers | Off-Target Analysis in Gene Editing and Applications for Clinical Translation of CRISPR/Cas9 in HIV-1 Therapy
Initiation site sequencing (ini-seq). Schematic representation of the... | Download Scientific Diagram
ORFs, Splicing & Coding
CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR–Cas9 nuclease off-targets | Nature Methods
The CIRCLE-seq target enrichment strategy creates an in vitro library... | Download Scientific Diagram
PCIP-seq: simultaneous sequencing of integrated viral genomes and their insertion sites with long reads | Genome Biology | Full Text
Mapping the genomic landscape of CRISPR–Cas9 cleavage | Nature Methods
RADAR-seq: A RAre DAmage and Repair sequencing method for detecting DNA damage on a genome-wide scale - ScienceDirect
Transcription Factor Binding Site Mapping Using ChIP-Seq | Microbiology Spectrum
Restriction Site Associated DNA Sequencing - an overview | ScienceDirect Topics
Combined HIV-1 sequence and integration site analysis informs viral dynamics and allows reconstruction of replicating viral ancestors | PNAS
HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay | Journal of Virology
Long-read sequencing for identification of insertion sites in large transposon mutant libraries | Scientific Reports
CReVIS-Seq: A highly accurate and multiplexable method for genome-wide mapping of lentiviral integration sites: Molecular Therapy - Methods & Clinical Development
Prokaryotic Transcription Start Sites | NEB
