How to Map and clean up short read sequence data efficiently - Legacy GATK Forum
BWA Aligner
Sequence File Formats | FASTQ & BCL formats for Illumina sequencing
SARS-CoV-2 Genome Assembly and Annotation Service | BV-BRC
FASTQ Preprocessing
First steps with NGS data
Biology | Free Full-Text | FLEXBAR—Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms
Illumina adapter portfolio - Illumina Knowledge
Illumina Adapter Trimming (Trimmomatic)
A single test approach for accurate and sensitive detection and taxonomic characterization of Trypanosomes by comprehensive anal
CLC Manuals - clcsupport.com
BecA Bioinformatics
An optimized, amplicon-based approach for sequencing of SARS-CoV-2 from patient samples using COVIDSeq assay on Illumina MiSeq sequencing platforms - ScienceDirect
Biomolecules | Free Full-Text | High-Throughput Identification of Adapters in Single-Read Sequencing Data
Trimming Illumina adapter sequences
User guide — cutadapt 1.7.1 documentation
Confluence Mobile - WIKI
Quality Control
Using UMIs with ThruPLEX Tag-Seq HV
Development and validation of a high throughput SARS-CoV-2 whole genome sequencing workflow in a clinical laboratory | Scientific Reports
The Basic Alignment Workflow - Core NGS Tools - UT Austin Wikis
Adapter trimming: Why are adapter sequences trimmed from only the 3' ends of reads - Illumina Knowledge
![16S-FASAS: an integrated pipeline for synthetic full-length 16S rRNA gene sequencing data analysis [PeerJ]](https://dfzljdn9uc3pi.cloudfront.net/2022/14043/1/fig-1-full.png "16S-FASAS: an integrated pipeline for synthetic full-length 16S rRNA gene sequencing data analysis [PeerJ]")
16S-FASAS: an integrated pipeline for synthetic full-length 16S rRNA gene sequencing data analysis [PeerJ]
SoftBerry - adapter trim
Adapter trimming: Why are adapter sequences trimmed from only the 3' ends of reads - Illumina Knowledge
First steps with NGS data
